STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF15854.1Transcriptional regulator, contains XRE-family HTH domain. (124 aa)    
Predicted Functional Partners:
SMF09121.1
DNA polymerase III, delta subunit.
  
     0.727
SMF82076.1
Helix-turn-helix domain-containing protein.
  
     0.723
SMF32061.1
Hypothetical protein.
  
     0.697
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
    0.671
SMF67025.1
Hypothetical protein.
  
     0.599
nadK
NAD+ kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
  
  
  0.570
lysS
lysyl-tRNA synthetase, class I; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.570
SMF18307.1
Uncharacterized conserved protein, LabA/DUF88 family.
  
     0.554
SMF46580.1
N-terminal double-transmembrane domain-containing protein.
  
     0.548
SME91833.1
Methyltransferase domain-containing protein.
  
     0.540
Your Current Organism:
Tistlia consotensis
NCBI taxonomy Id: 560819
Other names: T. consotensis USBA 355, Tistlia consotensis USBA 355, alpha proteobacterium USBA 355
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.