SMF24130.1 protein (Tistlia consotensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMF24130.1

Nicotinamidase-related amidase. (180 aa)

Predicted Functional Partners:

SME90659.1

0.998

SME90667.1

0.998

SMF03952.1

0.998

SMF69237.1

0.991

SMF69245.1

0.986

SMF03967.1

0.982

SMF03908.1

0.979

SMF36054.1

0.887

SMF24136.1

0.763

SMF32520.1

0.722

Your Current Organism:

Tistlia consotensis

NCBI taxonomy Id: 560819
Other names: T. consotensis USBA 355, Tistlia consotensis USBA 355, alpha proteobacterium USBA 355

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SME90659.1	SME90667.1	SAMN05428998_101331	SAMN05428998_101332	Amino acid adenylation domain-containing protein.	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	0.999
SME90659.1	SMF03908.1	SAMN05428998_101331	SAMN05428998_103171	Amino acid adenylation domain-containing protein.	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	0.999
SME90659.1	SMF03952.1	SAMN05428998_101331	SAMN05428998_103172	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SME90659.1	SMF03967.1	SAMN05428998_101331	SAMN05428998_103173	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SME90659.1	SMF24130.1	SAMN05428998_101331	SAMN05428998_10868	Amino acid adenylation domain-containing protein.	Nicotinamidase-related amidase.	0.998
SME90659.1	SMF24136.1	SAMN05428998_101331	SAMN05428998_10869	Amino acid adenylation domain-containing protein.	Pimeloyl-ACP methyl ester carboxylesterase.	0.949
SME90659.1	SMF36054.1	SAMN05428998_101331	SAMN05428998_11240	Amino acid adenylation domain-containing protein.	MbtH protein.	0.999
SME90659.1	SMF69237.1	SAMN05428998_101331	SAMN05428998_12847	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SME90659.1	SMF69245.1	SAMN05428998_101331	SAMN05428998_12848	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SME90667.1	SME90659.1	SAMN05428998_101332	SAMN05428998_101331	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SME90667.1	SMF03908.1	SAMN05428998_101332	SAMN05428998_103171	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	0.999
SME90667.1	SMF03952.1	SAMN05428998_101332	SAMN05428998_103172	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SME90667.1	SMF03967.1	SAMN05428998_101332	SAMN05428998_103173	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SME90667.1	SMF24130.1	SAMN05428998_101332	SAMN05428998_10868	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	Nicotinamidase-related amidase.	0.998
SME90667.1	SMF24136.1	SAMN05428998_101332	SAMN05428998_10869	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	Pimeloyl-ACP methyl ester carboxylesterase.	0.949
SME90667.1	SMF36054.1	SAMN05428998_101332	SAMN05428998_11240	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	MbtH protein.	0.999
SME90667.1	SMF69237.1	SAMN05428998_101332	SAMN05428998_12847	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SME90667.1	SMF69245.1	SAMN05428998_101332	SAMN05428998_12848	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SMF03908.1	SME90659.1	SAMN05428998_103171	SAMN05428998_101331	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SMF03908.1	SME90667.1	SAMN05428998_103171	SAMN05428998_101332	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.	0.999