STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF24368.1Trimethylamine---corrinoid protein Co-methyltransferase; Belongs to the trimethylamine methyltransferase family. (521 aa)    
Predicted Functional Partners:
SMF24347.1
Dimethylglycine dehydrogenase; Belongs to the GcvT family.
 
     0.916
SMF24354.1
4-methylaminobutanoate oxidase (formaldehyde-forming); Belongs to the GcvT family.
 
     0.899
SMF24341.1
Transcriptional regulator, XRE family with cupin sensor.
 
     0.795
SMF17679.1
methylmalonyl-CoA mutase C-terminal domain-containing protein.
  
 0.759
SMF17779.1
Uncharacterized 2Fe-2 and 4Fe-4S clusters-containing protein, contains DUF4445 domain.
 
     0.733
SME97793.1
Dimethylamine/trimethylamine dehydrogenase.
 
  
  0.695
SMF13685.1
Acyl-CoA synthetase (NDP forming).
  
     0.693
SMF17729.1
Virulence factor.
 
     0.659
SMF30065.1
2,4-dienoyl-CoA reductase.
    
  0.619
SMF76922.1
Fatty acid desaturase.
  
     0.610
Your Current Organism:
Tistlia consotensis
NCBI taxonomy Id: 560819
Other names: T. consotensis USBA 355, Tistlia consotensis USBA 355, alpha proteobacterium USBA 355
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