STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF60035.1Amino acid/amide ABC transporter substrate-binding protein, HAAT family. (429 aa)    
Predicted Functional Partners:
SMF60041.1
PQQ-dependent catabolism-associated beta-propeller protein.
 
  
 0.913
SMF60044.1
ABC-2 type transport system ATP-binding protein.
 
 
  0.909
SMF60048.1
ABC-2 type transport system permease protein.
 
   
 0.903
SMF60030.1
NitT/TauT family transport system substrate-binding protein.
 
    0.881
SMF60053.1
Hypothetical protein.
 
     0.872
SMF60023.1
NitT/TauT family transport system permease protein.
 
     0.869
SMF54209.1
PQQ-dependent catabolism-associated beta-propeller protein.
 
  
 0.812
SMF33238.1
Hypothetical protein.
 
    0.782
SMF80240.1
PQQ-dependent dehydrogenase, methanol/ethanol family.
 
    0.780
SMF80221.1
PQQ-dependent catabolism-associated CXXCW motif protein.
 
    0.775
Your Current Organism:
Tistlia consotensis
NCBI taxonomy Id: 560819
Other names: T. consotensis USBA 355, Tistlia consotensis USBA 355, alpha proteobacterium USBA 355
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.