STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF81260.1Predicted arabinose efflux permease, MFS family. (725 aa)    
Predicted Functional Partners:
SMF18901.1
Two-component system, chemotaxis family, response regulator CheY.
   
 0.970
SMF81256.1
Putative ABC transport system substrate-binding protein.
 
   
 0.959
SMF79058.1
Two-component sensor histidine kinase, contains HisKA and HATPase domains.
   
 0.953
SMF40391.1
PAS domain S-box-containing protein.
   
 0.949
SMF18607.1
Signal transduction histidine kinase.
   
 0.940
SMF56463.1
PAS/PAC sensor hybrid histidine kinase.
   
 0.940
SMF14478.1
Signal transduction histidine kinase.
   
 0.924
SMF81239.1
sigma-B regulation protein RsbU (phosphoserine phosphatase).
 
  
 0.893
SMF46081.1
Signal transduction histidine kinase.
   
 0.885
SMF83792.1
PAS domain S-box-containing protein.
   
 0.883
Your Current Organism:
Tistlia consotensis
NCBI taxonomy Id: 560819
Other names: T. consotensis USBA 355, Tistlia consotensis USBA 355, alpha proteobacterium USBA 355
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.