STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF81648.1Type IV secretory pathway, VirD2 components (relaxase). (663 aa)    
Predicted Functional Partners:
SMF81657.1
Conjugative transfer signal peptidase TraF.
     0.939
SMF81662.1
DNA binding domain-containing protein, excisionase family.
 
     0.873
SMF81671.1
Uncharacterized conserved protein, DUF736 family.
 
     0.823
SMF81617.1
Type IV secretion system protein VirD4.
 
   
 0.821
SMF81589.1
Type IV secretion system protein VirB4.
 
   
 0.805
SMF84154.1
Type IV secretion system protein VirB4.
 
   
 0.803
SMF81613.1
Ribbon-helix-helix protein, copG family.
 
     0.801
SMF81575.1
Type IV secretion system protein TrbL.
 
     0.794
SMF81582.1
P-type conjugative transfer protein TrbJ.
 
     0.794
SMF84151.1
P-type conjugative transfer protein TrbJ.
 
     0.793
Your Current Organism:
Tistlia consotensis
NCBI taxonomy Id: 560819
Other names: T. consotensis USBA 355, Tistlia consotensis USBA 355, alpha proteobacterium USBA 355
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