STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMF84154.1Type IV secretion system protein VirB4. (815 aa)    
Predicted Functional Partners:
SMF84160.1
Type IV secretion system protein VirB2.
 
 0.987
SMF84151.1
P-type conjugative transfer protein TrbJ.
  
 0.985
SMF84157.1
Type IV secretion system protein VirB3.
 
  
 0.980
SMF84140.1
Type IV secretion system protein VirB9.
 
 
 0.977
SMF84136.1
Type IV secretion system protein VirB10.
 
 0.976
SMF84164.1
Type IV secretion system protein VirB11.
 
  
 0.976
SMF81975.1
Type IV secretory pathway, component VirB8.
  
 
 0.973
SMF81566.1
Type IV secretion system protein VirB9.
 
 
 0.962
SMF81561.1
Type IV secretion system protein VirB10.
 
 
 0.960
SMF84144.1
Type IV secretion system protein VirB5.
 
  
 0.952
Your Current Organism:
Tistlia consotensis
NCBI taxonomy Id: 560819
Other names: T. consotensis USBA 355, Tistlia consotensis USBA 355, alpha proteobacterium USBA 355
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.