STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG09217.1Protein of unknown function. (378 aa)    
Predicted Functional Partners:
SMG09177.1
Starch-binding associating with outer membrane.
 
     0.939
SMG09174.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.928
SMG09223.1
Protein of unknown function.
 
    
0.863
SMG09168.1
Hypothetical protein.
     0.829
SMG09228.1
Protein of unknown function.
 
    
0.763
SMG09171.1
Concanavalin A-like lectin/glucanases superfamily protein.
 
     0.744
SMG07660.1
Hypothetical protein; Partial gene; manually curated.
  
     0.730
SMG07632.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.701
SMG08169.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.696
SMG07677.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.693
Your Current Organism:
Sphingobacterium psychroaquaticum
NCBI taxonomy Id: 561061
Other names: DSM 22418, NRRL B-59232, S. psychroaquaticum, Sphingobacterium psychroaquaticum Albert et al. 2013, Sphingobacterium sp. MOL-1, strain MOL-1
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