STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG11744.1Protein of unknown function (DU1801). (123 aa)    
Predicted Functional Partners:
SMG11731.1
GrpB domain, predicted nucleotidyltransferase, UPF0157 family.
       0.752
SMG11711.1
Acetyltransferase (GNAT) domain-containing protein.
       0.707
SMG08604.1
Methyltransferase domain-containing protein.
  
     0.524
SMG09842.1
Hypothetical protein.
  
     0.502
SMG42475.1
Uncharacterized damage-inducible protein DinB (forms a four-helix bundle).
  
     0.496
SMG11705.1
Transcriptional regulator, TetR family.
       0.456
SMG11813.1
Hypothetical protein.
  
     0.453
SMG05874.1
Protein of unknown function.
  
     0.439
SMG21246.1
Protein of unknown function (DU1801).
  
     0.425
Your Current Organism:
Sphingobacterium psychroaquaticum
NCBI taxonomy Id: 561061
Other names: DSM 22418, NRRL B-59232, S. psychroaquaticum, Sphingobacterium psychroaquaticum Albert et al. 2013, Sphingobacterium sp. MOL-1, strain MOL-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.