Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HtpG | SMG15634.1 | SAMN05660862_0815 | SAMN05660862_0978 | Molecular chaperone HtpG. | Hypothetical protein. | 0.968 |
HtpG | dnaK | SAMN05660862_0815 | SAMN05660862_1643 | Molecular chaperone HtpG. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.997 |
HtpG | grpE | SAMN05660862_0815 | SAMN05660862_0534 | Molecular chaperone HtpG. | Molecular chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP [...] | 0.819 |
SMG15634.1 | HtpG | SAMN05660862_0978 | SAMN05660862_0815 | Hypothetical protein. | Molecular chaperone HtpG. | 0.968 |
SMG15634.1 | SMG34528.1 | SAMN05660862_0978 | SAMN05660862_2391 | Hypothetical protein. | MerR HTH family regulatory protein. | 0.892 |
SMG15634.1 | dnaK | SAMN05660862_0978 | SAMN05660862_1643 | Hypothetical protein. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.987 |
SMG15634.1 | grpE | SAMN05660862_0978 | SAMN05660862_0534 | Hypothetical protein. | Molecular chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP [...] | 0.868 |
SMG15634.1 | rplC | SAMN05660862_0978 | SAMN05660862_1620 | Hypothetical protein. | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.856 |
SMG15634.1 | rplK | SAMN05660862_0978 | SAMN05660862_1394 | Hypothetical protein. | Large subunit ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.860 |
SMG15634.1 | rplM | SAMN05660862_0978 | SAMN05660862_3612 | Hypothetical protein. | Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.865 |
SMG15634.1 | rplN | SAMN05660862_0978 | SAMN05660862_1610 | Hypothetical protein. | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.856 |
SMG15634.1 | rplO | SAMN05660862_0978 | SAMN05660862_1601 | Hypothetical protein. | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.861 |
SMG15634.1 | rplQ | SAMN05660862_0978 | SAMN05660862_1592 | Hypothetical protein. | Large subunit ribosomal protein L17. | 0.869 |
SMG34528.1 | SMG15634.1 | SAMN05660862_2391 | SAMN05660862_0978 | MerR HTH family regulatory protein. | Hypothetical protein. | 0.892 |
SMG34528.1 | dnaK | SAMN05660862_2391 | SAMN05660862_1643 | MerR HTH family regulatory protein. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.451 |
SMG34528.1 | grpE | SAMN05660862_2391 | SAMN05660862_0534 | MerR HTH family regulatory protein. | Molecular chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP [...] | 0.429 |
dnaK | HtpG | SAMN05660862_1643 | SAMN05660862_0815 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Molecular chaperone HtpG. | 0.997 |
dnaK | SMG15634.1 | SAMN05660862_1643 | SAMN05660862_0978 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Hypothetical protein. | 0.987 |
dnaK | SMG34528.1 | SAMN05660862_1643 | SAMN05660862_2391 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | MerR HTH family regulatory protein. | 0.451 |
dnaK | grpE | SAMN05660862_1643 | SAMN05660862_0534 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Molecular chaperone GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP [...] | 0.997 |
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