STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG30614.1RNA polymerase sigma-70 factor, ECF subfamily. (203 aa)    
Predicted Functional Partners:
SMG30621.1
FecR family protein.
 
   0.851
SMG44777.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.734
SMG05817.1
RNA polymerase sigma-70 factor, ECF subfamily; Manually curated; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.733
SMG51185.1
RNA polymerase sigma-70 factor, ECF subfamily; Manually curated; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.725
SMG48860.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.722
SMG11963.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.706
SMG31373.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.704
SMG39825.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.703
SMG42689.1
FecR family protein.
  
   0.692
SMG16188.1
FecR family protein.
  
   0.686
Your Current Organism:
Sphingobacterium psychroaquaticum
NCBI taxonomy Id: 561061
Other names: DSM 22418, NRRL B-59232, S. psychroaquaticum, Sphingobacterium psychroaquaticum Albert et al. 2013, Sphingobacterium sp. MOL-1, strain MOL-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.