STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG34182.1L-threonylcarbamoyladenylate synthase; Belongs to the SUA5 family. (192 aa)    
Predicted Functional Partners:
SMG34174.1
2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.
       0.811
SMG34186.1
Protein of unknown function.
       0.726
SMG34167.1
Ribosome-associated heat shock protein Hsp15.
 
     0.671
SMG34155.1
Beta-aspartyl-peptidase (threonine type).
       0.553
SMG49213.1
pRiA4b ORF-3-like protein.
 
     0.535
SMG49064.1
Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family.
 
     0.497
SMG13388.1
Exonuclease SbcC.
   
   0.490
FolP
Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.
       0.474
rsmA
16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
    0.470
miaA-2
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
 
   
 0.460
Your Current Organism:
Sphingobacterium psychroaquaticum
NCBI taxonomy Id: 561061
Other names: DSM 22418, NRRL B-59232, S. psychroaquaticum, Sphingobacterium psychroaquaticum Albert et al. 2013, Sphingobacterium sp. MOL-1, strain MOL-1
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