STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG35030.1TonB-linked outer membrane protein, SusC/RagA family. (1072 aa)    
Predicted Functional Partners:
SMG35026.1
SusD family protein.
 
     0.944
SMG09749.1
Starch-binding associating with outer membrane.
  
 
   0.807
SMG30057.1
Starch-binding associating with outer membrane.
  
 
   0.800
SMG44724.1
SusD family protein.
  
 
   0.793
SMG36039.1
Starch-binding associating with outer membrane.
  
 
   0.786
SMG51168.1
Starch-binding associating with outer membrane.
  
 
   0.764
SMG11753.1
SusD family protein.
  
 
   0.763
SMG21218.1
SusD family protein.
  
 
   0.763
SMG34481.1
SusD family protein.
  
 
   0.761
SMG24633.1
SusD family protein.
  
 
   0.759
Your Current Organism:
Sphingobacterium psychroaquaticum
NCBI taxonomy Id: 561061
Other names: DSM 22418, NRRL B-59232, S. psychroaquaticum, Sphingobacterium psychroaquaticum Albert et al. 2013, Sphingobacterium sp. MOL-1, strain MOL-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.