STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG40136.1Hypothetical protein. (519 aa)    
Predicted Functional Partners:
SMG40133.1
Protein of unknown function.
 
    0.950
SMG40130.1
Outer membrane receptor proteins, mostly Fe transport.
 
    0.919
SMG21287.1
Protein of unknown function.
 
    0.687
SMG44233.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.652
SMG40139.1
Hypothetical protein.
       0.648
SMG08241.1
Outer membrane protein TolC.
  
     0.639
SMG44265.1
Starch-binding associating with outer membrane.
  
     0.590
SMG21281.1
TonB-dependent Receptor Plug Domain.
 
    0.580
SMG50978.1
Protein of unknown function.
  
     0.573
SMG28551.1
HmuY protein.
  
    0.555
Your Current Organism:
Sphingobacterium psychroaquaticum
NCBI taxonomy Id: 561061
Other names: DSM 22418, NRRL B-59232, S. psychroaquaticum, Sphingobacterium psychroaquaticum Albert et al. 2013, Sphingobacterium sp. MOL-1, strain MOL-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.