STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG43633.1Family of unknown function. (1449 aa)    
Predicted Functional Partners:
SMG19718.1
Outer membrane protein assembly factor BamA.
 
   
 0.786
SMG34487.1
OstA-like protein.
  
   
 0.771
SMG46926.1
Putative porin.
  
     0.768
SMG35264.1
Tetratricopeptide repeat-containing protein.
 
     0.765
SMG21530.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
     0.758
SMG38441.1
Ig-like domain-containing protein.
  
     0.758
SMG29890.1
Calcineurin-like phosphoesterase.
  
 
 0.757
SMG42891.1
TonB dependent receptor.
  
     0.756
SMG20801.1
Cell division protein FtsQ.
  
     0.753
SMG36128.1
Hypothetical protein.
  
     0.749
Your Current Organism:
Sphingobacterium psychroaquaticum
NCBI taxonomy Id: 561061
Other names: DSM 22418, NRRL B-59232, S. psychroaquaticum, Sphingobacterium psychroaquaticum Albert et al. 2013, Sphingobacterium sp. MOL-1, strain MOL-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.