Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFZ23385.1Hypothetical protein. (205 aa)    
Predicted Functional Partners:
AFZ23384.1
RNA polymerase, sigma subunit, ECF family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.794
AFZ23828.1
Hypothetical protein.
  
     0.773
AFZ27344.1
Putative RNA-binding protein (contains KH domain).
  
     0.770
AFZ28062.1
PFAM: Acetyltransferase (GNAT) family.
  
     0.769
AFZ22420.1
DnaJ-class molecular chaperone with C-terminal Zn finger domain.
  
     0.754
AFZ26432.1
Hypothetical protein.
  
     0.753
AFZ23534.1
Hypothetical protein.
  
     0.748
AFZ24797.1
Hypothetical protein; PFAM: Family of unknown function (DUF490).
  
     0.748
AFZ27286.1
Hypothetical protein.
  
     0.745
AFZ26359.1
Hypothetical protein.
  
     0.744
Your Current Organism:
Cylindrospermum stagnale
NCBI taxonomy Id: 56107
Other names: C. stagnale PCC 7417, Cylindrospermum sp. ATCC 29204, Cylindrospermum sp. PCC 7417, Cylindrospermum stagnale PCC 7417
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