Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AFZ24256.1PFAM: GH3 auxin-responsive promoter. (516 aa)    
Predicted Functional Partners:
AFZ24255.1
Hypothetical protein; PFAM: Bacterial transferase hexapeptide (three repeats).
 
     0.952
AFZ24254.1
Sterol desaturase; PFAM: Fatty acid hydroxylase superfamily.
 
     0.946
AFZ24220.1
Hypothetical protein.
 
     0.788
AFZ24247.1
Ring-hydroxylating dioxygenase, large terminal subunit; PFAM: Rieske [2Fe-2S] domain.
 
    0.780
AFZ24221.1
Rieske (2Fe-2S) domain-containing protein; PFAM: Rieske [2Fe-2S] domain.
 
    0.771
AFZ24219.1
Ring-hydroxylating dioxygenase, large terminal subunit; PFAM: Rieske [2Fe-2S] domain.
 
     0.749
AFZ23515.1
Ring-hydroxylating dioxygenase, large terminal subunit; PFAM: Rieske [2Fe-2S] domain.
 
    0.724
AFZ24755.1
Hypothetical protein.
  
     0.611
AFZ26271.1
PFAM: PAP_fibrillin.
  
     0.591
AFZ23277.1
Putative membrane protein; PFAM: Domain of Unknown Function (DUF350).
  
     0.524
Your Current Organism:
Cylindrospermum stagnale
NCBI taxonomy Id: 56107
Other names: C. stagnale PCC 7417, Cylindrospermum sp. ATCC 29204, Cylindrospermum sp. PCC 7417, Cylindrospermum stagnale PCC 7417
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