STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ24796.1PFAM: Calpain family cysteine protease. (657 aa)    
Predicted Functional Partners:
AFZ24795.1
Hypothetical protein.
       0.741
AFZ24797.1
Hypothetical protein; PFAM: Family of unknown function (DUF490).
       0.543
AFZ23765.1
Hypothetical protein.
  
     0.516
AFZ25091.1
Amino acid permease; PFAM: Tryptophan/tyrosine permease family.
  
     0.511
AFZ26283.1
Putative ATP-utilizing enzyme (ATP-grasp superfamily); PFAM: ATP-grasp domain.
  
     0.474
AFZ23800.1
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Localisation of periplasmic protein complexes; TIGRFAM: TonB-dependent siderophore receptor.
    
 
 0.450
AFZ27273.1
PFAM: Protein of unknown function (DUF2958).
  
     0.431
AFZ25912.1
PFAM: HAMP domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
  
  
 0.405
Your Current Organism:
Cylindrospermum stagnale
NCBI taxonomy Id: 56107
Other names: C. stagnale PCC 7417, Cylindrospermum sp. ATCC 29204, Cylindrospermum sp. PCC 7417, Cylindrospermum stagnale PCC 7417
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.