STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ27844.1PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT. (375 aa)    
Predicted Functional Partners:
AFZ27843.1
Type II secretory pathway, component PulF; PFAM: Bacterial type II secretion system protein F domain.
 
  
 0.927
AFZ26434.1
PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM.
 
   
 0.844
AFZ25121.1
Type 4 prepilin peptidase 1; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.833
AFZ27845.1
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain.
 
  
0.747
AFZ24966.1
PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: general secretion pathway protein G; prepilin-type N-terminal cleavage/methylation domain.
 
   
 0.718
AFZ25912.1
PFAM: HAMP domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
  
  
 0.492
AFZ24043.1
PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein.
     
 0.453
AFZ22572.1
Signal transduction histidine kinase.
     
 0.436
AFZ23914.1
PFAM: GGDEF domain; GAF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
   
 0.426
AFZ26231.1
Chemotaxis protein histidine kinase-like protein; PFAM: CheW-like domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transducing histidine kinase, homodimeric domain; Hpt domain.
 
   
 0.424
Your Current Organism:
Cylindrospermum stagnale
NCBI taxonomy Id: 56107
Other names: C. stagnale PCC 7417, Cylindrospermum sp. ATCC 29204, Cylindrospermum sp. PCC 7417, Cylindrospermum stagnale PCC 7417
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