STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY80345.1Transposase. (540 aa)    
Predicted Functional Partners:
thiL
Thiamine-phosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
       0.563
AFY80155.1
PFAM: RAMP superfamily; CRISPR-associated protein (Cas_Cmr3); TIGRFAM: CRISPR-associated RAMP protein, Csx10 family.
  
     0.556
AFY80156.1
Putative RAMP superfamily protein probably involved in DNA repair; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, SSO1426 family.
  
     0.522
AFY80151.1
Putative RAMP superfamily protein probably involved in DNA repair; PFAM: RAMP superfamily.
  
     0.501
AFY84269.1
Hypothetical protein.
  
     0.500
AFY80157.1
TIGRFAM: CRISPR-associated protein Cas10/Cmr2, subtype III-B.
  
     0.489
AFY84125.1
Hypothetical protein.
  
     0.466
AFY85413.1
Hypothetical protein.
  
     0.447
AFY83458.1
Hypothetical protein.
  
     0.434
AFY80152.1
PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, SSO1426 family.
  
     0.433
Your Current Organism:
Oscillatoria acuminata
NCBI taxonomy Id: 56110
Other names: Microcoleus vaginatus KFRI M-7.1.1, O. acuminata PCC 6304, Oscillatoria acuminata PCC 6304, Oscillatoria sp. ATCC 27930, Oscillatoria sp. PCC 6304
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