STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY81086.1PFAM: Putative transposase, YhgA-like. (320 aa)    
Predicted Functional Partners:
AFY81087.1
Hypothetical protein.
      
0.542
AFY84540.1
Hypothetical protein.
  
     0.502
AFY84696.1
Hypothetical protein.
  
     0.502
AFY81434.1
PFAM: Protein of unknown function (DUF2887); TIGRFAM: conserved hypothetical protein (putative transposase or invertase).
  
     0.462
AFY81085.1
Hypothetical protein.
       0.461
AFY80142.1
Hypothetical protein; Manually curated.
  
     0.431
AFY80688.1
Hypothetical protein.
  
     0.430
AFY79922.1
Hypothetical protein.
  
     0.428
AFY82491.1
Putative nucleic acid-binding protein, contains PIN domain.
  
     0.417
AFY84541.1
Hypothetical protein.
  
     0.404
Your Current Organism:
Oscillatoria acuminata
NCBI taxonomy Id: 56110
Other names: Microcoleus vaginatus KFRI M-7.1.1, O. acuminata PCC 6304, Oscillatoria acuminata PCC 6304, Oscillatoria sp. ATCC 27930, Oscillatoria sp. PCC 6304
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