STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY81284.1PFAM: Polysaccharide pyruvyl transferase. (305 aa)    
Predicted Functional Partners:
AFY85011.1
Hypothetical protein.
  
     0.696
AFY85017.1
PFAM: Domain of unknown function (DUF1929); Glyoxal oxidase N-terminus.
  
     0.685
AFY85010.1
Choline dehydrogenase-like flavoprotein; PFAM: FAD binding domain; GMC oxidoreductase.
  
     0.557
AFY85016.1
Sugar phosphate isomerase/epimerase; PFAM: Xylose isomerase-like TIM barrel.
  
     0.516
AFY81285.1
PFAM: Glycosyl transferase family 2.
 
    0.485
AFY85355.1
PFAM: Uncharacterized protein domain (DUF2202).
  
     0.481
AFY85018.1
Putative iron-dependent peroxidase; PFAM: Dyp-type peroxidase family; TIGRFAM: Dyp-type peroxidase family.
  
     0.471
AFY84299.1
Hypothetical protein.
  
     0.463
AFY80352.1
HEAT repeat-containing protein.
  
     0.446
AFY83201.1
Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain.
  
     0.433
Your Current Organism:
Oscillatoria acuminata
NCBI taxonomy Id: 56110
Other names: Microcoleus vaginatus KFRI M-7.1.1, O. acuminata PCC 6304, Oscillatoria acuminata PCC 6304, Oscillatoria sp. ATCC 27930, Oscillatoria sp. PCC 6304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.