STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY81837.1PFAM: Nucleotidyltransferase domain. (97 aa)    
Predicted Functional Partners:
AFY81838.1
PFAM: Protein of unknown function DUF86.
 
  
 0.902
AFY81835.1
Hypothetical protein.
       0.773
AFY81836.1
PFAM: Protein of unknown function (DUF820).
       0.773
AFY81839.1
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
       0.762
AFY80900.1
PFAM: Protein of unknown function DUF86.
 
  
 0.623
AFY80023.1
PFAM: Protein of unknown function DUF86.
 
  
 0.597
AFY81523.1
PFAM: Protein of unknown function DUF86.
 
  
 0.585
AFY81352.1
PFAM: Protein of unknown function DUF86.
  
  
 0.495
AFY81834.1
Hypothetical protein; PFAM: Fic/DOC family.
       0.456
AFY79933.1
PFAM: Protein of unknown function DUF86.
  
  
 0.413
Your Current Organism:
Oscillatoria acuminata
NCBI taxonomy Id: 56110
Other names: Microcoleus vaginatus KFRI M-7.1.1, O. acuminata PCC 6304, Oscillatoria acuminata PCC 6304, Oscillatoria sp. ATCC 27930, Oscillatoria sp. PCC 6304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.