STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY83841.1Hypothetical protein. (212 aa)    
Predicted Functional Partners:
AFY83842.1
PFAM: Protein of unknown function (DUF1822).
 
     0.929
AFY83843.1
Hypothetical protein.
 
     0.793
AFY82424.1
PFAM: Protein of unknown function (DUF1822).
 
     0.774
AFY83828.1
PFAM: Protein of unknown function (DUF1822).
 
     0.767
AFY81431.1
PFAM: Protein of unknown function (DUF1822).
 
     0.757
AFY83277.1
PFAM: Protein of unknown function (DUF1822).
 
     0.735
AFY83911.1
PFAM: Protein of unknown function (DUF1822).
 
     0.733
AFY83802.1
PFAM: Protein of unknown function (DUF1822).
  
     0.714
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.627
AFY79780.1
Hypothetical protein.
  
     0.623
Your Current Organism:
Oscillatoria acuminata
NCBI taxonomy Id: 56110
Other names: Microcoleus vaginatus KFRI M-7.1.1, O. acuminata PCC 6304, Oscillatoria acuminata PCC 6304, Oscillatoria sp. ATCC 27930, Oscillatoria sp. PCC 6304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.