STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY83855.1Hypothetical protein. (157 aa)    
Predicted Functional Partners:
AFY83854.1
Putative hydrocarbon binding protein (contains V4R domain); PFAM: V4R domain.
 
   
 0.918
AFY83857.1
Putative hydrocarbon binding protein (contains V4R domain); PFAM: V4R domain.
 
   
 0.899
AFY84923.1
Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain.
 
     0.799
AFY83766.1
Hypothetical protein.
  
     0.633
AFY85207.1
PFAM: Domain of Unknown Function (DUF928).
  
     0.608
AFY84271.1
FHA domain-containing protein; PFAM: FHA domain.
  
     0.570
AFY80124.1
Hypothetical protein.
  
     0.564
AFY83856.1
Hypothetical protein.
       0.562
AFY84220.1
Hypothetical protein.
  
     0.549
AFY82611.1
PFAM: Domain of Unknown Function (DUF928).
  
     0.513
Your Current Organism:
Oscillatoria acuminata
NCBI taxonomy Id: 56110
Other names: Microcoleus vaginatus KFRI M-7.1.1, O. acuminata PCC 6304, Oscillatoria acuminata PCC 6304, Oscillatoria sp. ATCC 27930, Oscillatoria sp. PCC 6304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.