STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY84407.1TIGRFAM: CRISPR type I-D/CYANO-associated protein Csc1. (256 aa)    
Predicted Functional Partners:
AFY84406.1
CRISPR-associated endoribonuclease Cas6; PFAM: Uncharacterized conserved protein (DUF2276); TIGRFAM: CRISPR-associated endoribonuclease Cas6.
 
     0.949
AFY84408.1
TIGRFAM: CRISPR type I-D/CYANO-associated protein Csc2.
 
     0.881
cas2
CRISPR-associated endoribonuclease Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
     0.856
AFY84409.1
TIGRFAM: CRISPR type I-D/CYANO-associated protein Csc3/Cas10d.
 
     0.854
AFY84410.1
CRISPR-associated helicase, Cas3 family; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: CRISPR-associated helicase Cas3, subtype CYANO.
 
     0.825
AFY79792.1
Hypothetical protein.
  
     0.688
AFY85239.1
Hypothetical protein.
  
     0.644
AFY83912.1
Hypothetical protein.
  
     0.621
AFY85319.1
CRISPR-associated protein, Cas6 family; PFAM: Uncharacterized conserved protein (DUF2276); TIGRFAM: CRISPR-associated endoribonuclease Cas6.
 
     0.612
AFY85315.1
TIGRFAM: CRISPR type I-D/CYANO-associated protein Csc2.
 
     0.602
Your Current Organism:
Oscillatoria acuminata
NCBI taxonomy Id: 56110
Other names: Microcoleus vaginatus KFRI M-7.1.1, O. acuminata PCC 6304, Oscillatoria acuminata PCC 6304, Oscillatoria sp. ATCC 27930, Oscillatoria sp. PCC 6304
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