STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY84547.1TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain. (570 aa)    
Predicted Functional Partners:
AFY82815.1
Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain; Localisation of periplasmic protein complexes.
 
 
 0.979
AFY80048.1
PFAM: Biopolymer transport protein ExbD/TolR.
 
 
 0.949
AFY83324.1
PFAM: Biopolymer transport protein ExbD/TolR.
 
 
 0.947
AFY83325.1
Biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel family.
 
 
 0.922
AFY80047.1
Biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel family.
 
 
 0.900
AFY81149.1
Putative peptidoglycan-binding domain-containing protein; PFAM: Putative peptidoglycan binding domain.
  
    0.574
AFY84548.1
Hypothetical protein; PFAM: MORN repeat.
       0.562
AFY84549.1
Hypothetical protein.
       0.481
AFY82819.1
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component; PFAM: ABC transporter.
 
  
 0.446
AFY83690.1
Ribonuclease, Rne/Rng family; PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family.
  
  
 0.413
Your Current Organism:
Oscillatoria acuminata
NCBI taxonomy Id: 56110
Other names: Microcoleus vaginatus KFRI M-7.1.1, O. acuminata PCC 6304, Oscillatoria acuminata PCC 6304, Oscillatoria sp. ATCC 27930, Oscillatoria sp. PCC 6304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.