STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000374305_03125Unannotated protein. (252 aa)    
Predicted Functional Partners:
GCA_000374305_00793
Unannotated protein.
  
     0.769
GCA_000374305_05552
Unannotated protein.
  
     0.769
GCA_000374305_02485
Unannotated protein.
  
     0.762
GCA_000374305_04069
Unannotated protein.
  
    0.673
GCA_000374305_04070
Unannotated protein.
  
    0.608
GCA_000374305_02385
Unannotated protein.
  
     0.547
GCA_000374305_02398
Unannotated protein.
  
    0.462
GCA_000374305_00614
Unannotated protein.
  
  
  0.429
GCA_000374305_00615
Unannotated protein.
  
  
  0.415
GCA_000374305_04159
Unannotated protein.
  
    0.413
Your Current Organism:
Actinomadura flavalba
NCBI taxonomy Id: 561175
Other names: A. flavalba DSM 45200, Actinomadura flavalba DSM 45200, Actinomadura flavalba YIM 61435, Actinomadura sp. YIM 61435
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.