STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000374305_05161Unannotated protein. (455 aa)    
Predicted Functional Partners:
GCA_000374305_04026
Unannotated protein.
 
  
0.878
GCA_000374305_02275
Unannotated protein.
 
  
0.605
GCA_000374305_05160
Unannotated protein.
       0.528
GCA_000374305_02292
Unannotated protein.
  
     0.432
GCA_000374305_02291
Unannotated protein.
  
     0.429
GCA_000374305_01347
Unannotated protein.
 
     0.426
GCA_000374305_04199
Unannotated protein.
 
     0.416
GCA_000374305_02133
Unannotated protein.
  
    0.412
Your Current Organism:
Actinomadura flavalba
NCBI taxonomy Id: 561175
Other names: A. flavalba DSM 45200, Actinomadura flavalba DSM 45200, Actinomadura flavalba YIM 61435, Actinomadura sp. YIM 61435
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.