SED84705.1 protein (Jiangella alba) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SED84705.1

Iron-regulated ABC transporter permease protein SufD. (405 aa)

Predicted Functional Partners:

SED84742.1

0.999

SED84783.1

0.978

SEF15636.1

0.943

SED84665.1

0.865

SEF18516.1

0.828

SEE83165.1

0.785

SED84626.1

0.724

SEE41624.1

0.654

SEE61235.1

0.624

SEE81903.1

0.624

Your Current Organism:

Jiangella alba

NCBI taxonomy Id: 561176
Other names: CCTCC AA 208023, DSM 45237, J. alba, JCM 16901, Jiangella alba Qin et al. 2009, Jiangella sp. YIM 61503, YIM 61503

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SED84626.1	SED84665.1	SAMN04488561_0582	SAMN04488561_0583	Predicted transcriptional regulator, ArsR family.	Iron-regulated ABC transporter membrane component SufB.	0.963
SED84626.1	SED84705.1	SAMN04488561_0582	SAMN04488561_0584	Predicted transcriptional regulator, ArsR family.	Iron-regulated ABC transporter permease protein SufD.	0.724
SED84626.1	SED84742.1	SAMN04488561_0582	SAMN04488561_0585	Predicted transcriptional regulator, ArsR family.	Fe-S cluster assembly ATP-binding protein.	0.645
SED84626.1	SED84783.1	SAMN04488561_0582	SAMN04488561_0586	Predicted transcriptional regulator, ArsR family.	Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.	0.513
SED84665.1	SED84626.1	SAMN04488561_0583	SAMN04488561_0582	Iron-regulated ABC transporter membrane component SufB.	Predicted transcriptional regulator, ArsR family.	0.963
SED84665.1	SED84705.1	SAMN04488561_0583	SAMN04488561_0584	Iron-regulated ABC transporter membrane component SufB.	Iron-regulated ABC transporter permease protein SufD.	0.865
SED84665.1	SED84742.1	SAMN04488561_0583	SAMN04488561_0585	Iron-regulated ABC transporter membrane component SufB.	Fe-S cluster assembly ATP-binding protein.	0.999
SED84665.1	SED84783.1	SAMN04488561_0583	SAMN04488561_0586	Iron-regulated ABC transporter membrane component SufB.	Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.	0.994
SED84665.1	SEE41624.1	SAMN04488561_0583	SAMN04488561_1256	Iron-regulated ABC transporter membrane component SufB.	Cysteine desulfurase.	0.654
SED84665.1	SEE61235.1	SAMN04488561_0583	SAMN04488561_1950	Iron-regulated ABC transporter membrane component SufB.	Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.	0.624
SED84665.1	SEE81903.1	SAMN04488561_0583	SAMN04488561_2831	Iron-regulated ABC transporter membrane component SufB.	Fe-S cluster assembly iron-binding protein IscA.	0.624
SED84665.1	SEE83165.1	SAMN04488561_0583	SAMN04488561_2886	Iron-regulated ABC transporter membrane component SufB.	Selenocysteine lyase/Cysteine desulfurase.	0.785
SED84665.1	SEF15636.1	SAMN04488561_0583	SAMN04488561_5027	Iron-regulated ABC transporter membrane component SufB.	Selenocysteine lyase/Cysteine desulfurase.	0.954
SED84665.1	SEF18516.1	SAMN04488561_0583	SAMN04488561_6580	Iron-regulated ABC transporter membrane component SufB.	Selenocysteine lyase/Cysteine desulfurase.	0.824
SED84705.1	SED84626.1	SAMN04488561_0584	SAMN04488561_0582	Iron-regulated ABC transporter permease protein SufD.	Predicted transcriptional regulator, ArsR family.	0.724
SED84705.1	SED84665.1	SAMN04488561_0584	SAMN04488561_0583	Iron-regulated ABC transporter permease protein SufD.	Iron-regulated ABC transporter membrane component SufB.	0.865
SED84705.1	SED84742.1	SAMN04488561_0584	SAMN04488561_0585	Iron-regulated ABC transporter permease protein SufD.	Fe-S cluster assembly ATP-binding protein.	0.999
SED84705.1	SED84783.1	SAMN04488561_0584	SAMN04488561_0586	Iron-regulated ABC transporter permease protein SufD.	Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.	0.978
SED84705.1	SEE41624.1	SAMN04488561_0584	SAMN04488561_1256	Iron-regulated ABC transporter permease protein SufD.	Cysteine desulfurase.	0.654
SED84705.1	SEE61235.1	SAMN04488561_0584	SAMN04488561_1950	Iron-regulated ABC transporter permease protein SufD.	Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.	0.624