SEE28237.1 protein (Jiangella alba) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEE28237.1

L-rhamnose mutarotase. (118 aa)

Predicted Functional Partners:

SEE28158.1

0.773

SEE28198.1

0.773

SEE28281.1

0.773

SEE28321.1

0.773

SEF12186.1

0.688

SEE28359.1

0.661

SEE28117.1

0.630

SEF16157.1

0.628

SEF18943.1

0.625

SEE79793.1

0.623

Your Current Organism:

Jiangella alba

NCBI taxonomy Id: 561176
Other names: CCTCC AA 208023, DSM 45237, J. alba, JCM 16901, Jiangella alba Qin et al. 2009, Jiangella sp. YIM 61503, YIM 61503

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEE28117.1	SEE28158.1	SAMN04488561_0873	SAMN04488561_0874	Monosaccharide ABC transporter substrate-binding protein, CUT2 family.	beta-Glucocerebrosidase 2 N terminal.	0.623
SEE28117.1	SEE28198.1	SAMN04488561_0873	SAMN04488561_0875	Monosaccharide ABC transporter substrate-binding protein, CUT2 family.	CobW/HypB/UreG, nucleotide-binding domain.	0.623
SEE28117.1	SEE28237.1	SAMN04488561_0873	SAMN04488561_0876	Monosaccharide ABC transporter substrate-binding protein, CUT2 family.	L-rhamnose mutarotase.	0.630
SEE28117.1	SEE28281.1	SAMN04488561_0873	SAMN04488561_0877	Monosaccharide ABC transporter substrate-binding protein, CUT2 family.	Glycerol uptake facilitator (Major Intrinsic Protein Family); Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.636
SEE28117.1	SEE28321.1	SAMN04488561_0873	SAMN04488561_0878	Monosaccharide ABC transporter substrate-binding protein, CUT2 family.	Glyoxalase-like domain-containing protein.	0.623
SEE28117.1	SEE28359.1	SAMN04488561_0873	SAMN04488561_0879	Monosaccharide ABC transporter substrate-binding protein, CUT2 family.	Hypothetical protein.	0.537
SEE28158.1	SEE28117.1	SAMN04488561_0874	SAMN04488561_0873	beta-Glucocerebrosidase 2 N terminal.	Monosaccharide ABC transporter substrate-binding protein, CUT2 family.	0.623
SEE28158.1	SEE28198.1	SAMN04488561_0874	SAMN04488561_0875	beta-Glucocerebrosidase 2 N terminal.	CobW/HypB/UreG, nucleotide-binding domain.	0.782
SEE28158.1	SEE28237.1	SAMN04488561_0874	SAMN04488561_0876	beta-Glucocerebrosidase 2 N terminal.	L-rhamnose mutarotase.	0.773
SEE28158.1	SEE28281.1	SAMN04488561_0874	SAMN04488561_0877	beta-Glucocerebrosidase 2 N terminal.	Glycerol uptake facilitator (Major Intrinsic Protein Family); Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.786
SEE28158.1	SEE28321.1	SAMN04488561_0874	SAMN04488561_0878	beta-Glucocerebrosidase 2 N terminal.	Glyoxalase-like domain-containing protein.	0.773
SEE28158.1	SEE28359.1	SAMN04488561_0874	SAMN04488561_0879	beta-Glucocerebrosidase 2 N terminal.	Hypothetical protein.	0.661
SEE28198.1	SEE28117.1	SAMN04488561_0875	SAMN04488561_0873	CobW/HypB/UreG, nucleotide-binding domain.	Monosaccharide ABC transporter substrate-binding protein, CUT2 family.	0.623
SEE28198.1	SEE28158.1	SAMN04488561_0875	SAMN04488561_0874	CobW/HypB/UreG, nucleotide-binding domain.	beta-Glucocerebrosidase 2 N terminal.	0.782
SEE28198.1	SEE28237.1	SAMN04488561_0875	SAMN04488561_0876	CobW/HypB/UreG, nucleotide-binding domain.	L-rhamnose mutarotase.	0.773
SEE28198.1	SEE28281.1	SAMN04488561_0875	SAMN04488561_0877	CobW/HypB/UreG, nucleotide-binding domain.	Glycerol uptake facilitator (Major Intrinsic Protein Family); Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.781
SEE28198.1	SEE28321.1	SAMN04488561_0875	SAMN04488561_0878	CobW/HypB/UreG, nucleotide-binding domain.	Glyoxalase-like domain-containing protein.	0.773
SEE28198.1	SEE28359.1	SAMN04488561_0875	SAMN04488561_0879	CobW/HypB/UreG, nucleotide-binding domain.	Hypothetical protein.	0.661
SEE28237.1	SEE28117.1	SAMN04488561_0876	SAMN04488561_0873	L-rhamnose mutarotase.	Monosaccharide ABC transporter substrate-binding protein, CUT2 family.	0.630
SEE28237.1	SEE28158.1	SAMN04488561_0876	SAMN04488561_0874	L-rhamnose mutarotase.	beta-Glucocerebrosidase 2 N terminal.	0.773