STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE60288.1Hypothetical protein. (634 aa)    
Predicted Functional Partners:
SEE60229.1
Hypothetical protein.
       0.804
SEE60262.1
Hypothetical protein.
       0.804
SEE60311.1
CHAT domain-containing protein.
      0.799
hisS
histidyl-tRNA synthetase.
  
    0.707
hisS-2
histidyl-tRNA synthetase.
  
    0.707
SEE33152.1
Hypothetical protein.
  
    0.671
SEF18673.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
    0.625
SEE85583.1
6-phosphogluconolactonase, cycloisomerase 2 family.
  
    0.599
SEE85696.1
Hypothetical protein.
  
    0.599
SEE60201.1
Protein of unknown function.
       0.549
Your Current Organism:
Jiangella alba
NCBI taxonomy Id: 561176
Other names: CCTCC AA 208023, DSM 45237, J. alba, JCM 16901, Jiangella alba Qin et al. 2009, Jiangella sp. YIM 61503, YIM 61503
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