STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE66294.1RNA polymerase sigma-70 factor, ECF subfamily. (397 aa)    
Predicted Functional Partners:
SEE66317.1
Uncharacterized conserved protein.
 
     0.937
SEF18273.1
Uncharacterized conserved protein.
  
     0.774
SEE66341.1
PhnB protein.
       0.773
SEF16670.1
Uncharacterized conserved protein.
  
     0.773
SEF13627.1
Uncharacterized conserved protein.
  
     0.772
SEF16714.1
Uncharacterized conserved protein.
  
     0.771
SEF16307.1
Uncharacterized conserved protein.
  
     0.767
SEF17368.1
Uncharacterized conserved protein.
  
     0.767
SEE74617.1
Uncharacterized conserved protein.
  
     0.761
SEF17320.1
Uncharacterized conserved protein.
  
     0.760
Your Current Organism:
Jiangella alba
NCBI taxonomy Id: 561176
Other names: CCTCC AA 208023, DSM 45237, J. alba, JCM 16901, Jiangella alba Qin et al. 2009, Jiangella sp. YIM 61503, YIM 61503
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