STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEE82188.1Putative RecB family exonuclease. (299 aa)    
Predicted Functional Partners:
SEF17881.1
ATP-dependent DNA helicase, Rep family.
   
  0.811
SEF17868.1
Superfamily I DNA or RNA helicase; Belongs to the helicase family. UvrD subfamily.
 
 
  0.624
SEF17870.1
DNA helicase-2 / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily.
 
 
  0.609
SEE82211.1
Zn-dependent protease (includes SpoIVFB); Belongs to the peptidase M50B family.
       0.598
SEE86069.1
Phosphatidylinositol alpha-mannosyltransferase.
  
     0.561
SEE86055.1
Hypothetical protein.
  
     0.559
SEF08205.1
ATP-dependent DNA helicase PcrA.
   
  0.559
SEF15232.1
Hypothetical protein; Manually curated.
   
  0.559
SEE86089.1
KDO2-lipid IV(A) lauroyltransferase.
  
     0.548
SEE82235.1
tRNA (adenine-58-N(1)-) methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.
       0.515
Your Current Organism:
Jiangella alba
NCBI taxonomy Id: 561176
Other names: CCTCC AA 208023, DSM 45237, J. alba, JCM 16901, Jiangella alba Qin et al. 2009, Jiangella sp. YIM 61503, YIM 61503
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