STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF11102.1Sugar-specific transcriptional regulator TrmB. (327 aa)    
Predicted Functional Partners:
SEF11111.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
       0.693
SEF11095.1
Serine protease, subtilisin family.
 
     0.679
SEF12560.1
ABC-2 family transporter protein.
  
     0.600
SEF12296.1
Serine protease, subtilisin family.
  
     0.442
SEF16285.1
DNA-binding transcriptional activator of the SARP family.
  
     0.438
SED81990.1
DNA-binding transcriptional activator of the SARP family.
  
     0.436
SEF18143.1
DNA-binding transcriptional activator of the SARP family.
  
     0.436
SEF12566.1
ABC-2 type transport system ATP-binding protein.
  
     0.422
SEF16341.1
DNA-binding transcriptional activator of the SARP family.
  
     0.409
Your Current Organism:
Jiangella alba
NCBI taxonomy Id: 561176
Other names: CCTCC AA 208023, DSM 45237, J. alba, JCM 16901, Jiangella alba Qin et al. 2009, Jiangella sp. YIM 61503, YIM 61503
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.