STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF12375.1D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4). (457 aa)    
Predicted Functional Partners:
SEF12368.1
Putative hydrolase/uncharacterized protein, coenzyme F420 biosynthesis associated.
 
  
 0.862
SED57358.1
Muramoyltetrapeptide carboxypeptidase.
 
  
 0.830
SEF13242.1
Membrane carboxypeptidase (penicillin-binding protein).
  
  
 0.786
SED68165.1
D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4).
 
     0.755
SEF17076.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
     
 0.754
SEF14652.1
Cell elongation-specific peptidoglycan D,D-transpeptidase.
     
 0.753
SED78712.1
Peptidoglycan synthetase FtsI.
     
 0.719
SEF16253.1
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases-containing protein.
     
 0.711
SEF15727.1
Lipoprotein-anchoring transpeptidase ErfK/SrfK.
     
 0.694
SEF12511.1
Membrane carboxypeptidase (penicillin-binding protein).
     
 0.692
Your Current Organism:
Jiangella alba
NCBI taxonomy Id: 561176
Other names: CCTCC AA 208023, DSM 45237, J. alba, JCM 16901, Jiangella alba Qin et al. 2009, Jiangella sp. YIM 61503, YIM 61503
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