STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF12839.1Pilus assembly protein CpaF. (402 aa)    
Predicted Functional Partners:
SEF12832.1
Tight adherence protein B.
  
  
 0.872
SEF12845.1
Helicase/secretion neighborhood CpaE-like protein.
      0.838
SEF12851.1
Hypothetical protein.
       0.671
SEF12826.1
Type II secretion system (T2SS), protein F.
  
  
 0.656
SEF12856.1
HAD-superfamily subfamily IB hydrolase, TIGR01490.
       0.527
SEF12814.1
Protein of unknown function.
     
 0.468
SEF12808.1
TadE-like protein.
  
    0.460
SEF16850.1
Flp pilus assembly protein CpaB.
  
  
 0.443
Your Current Organism:
Jiangella alba
NCBI taxonomy Id: 561176
Other names: CCTCC AA 208023, DSM 45237, J. alba, JCM 16901, Jiangella alba Qin et al. 2009, Jiangella sp. YIM 61503, YIM 61503
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.