STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF12888.1Helix-turn-helix domain-containing protein. (192 aa)    
Predicted Functional Partners:
SEF12895.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
 
    0.916
SEF12902.1
MFS transporter, DHA2 family, multidrug resistance protein.
       0.773
SEF15783.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
  
    0.768
SEE30567.1
Hypothetical protein.
  
     0.685
SEF12560.1
ABC-2 family transporter protein.
  
     0.593
SEF12878.1
Hypothetical protein.
       0.556
SEF12566.1
ABC-2 type transport system ATP-binding protein.
  
     0.548
SEE92673.1
3',5'-cyclic AMP phosphodiesterase CpdA.
  
     0.497
SEF16181.1
Hypothetical protein.
  
     0.427
SEE62737.1
Predicted ATPase.
  
     0.425
Your Current Organism:
Jiangella alba
NCBI taxonomy Id: 561176
Other names: CCTCC AA 208023, DSM 45237, J. alba, JCM 16901, Jiangella alba Qin et al. 2009, Jiangella sp. YIM 61503, YIM 61503
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.