STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF13839.1Hypothetical protein. (118 aa)    
Predicted Functional Partners:
SEF13852.1
Type II secretion system (T2SS), protein F.
       0.797
SEF13847.1
Flp pilus assembly protein TadB.
       0.792
SEF13856.1
TadE-like protein.
       0.790
SEF13843.1
Pilus assembly protein, ATPase of CpaF family.
       0.786
SEF13834.1
Hypothetical protein.
       0.563
SEF13865.1
Putative Flp pilus-assembly TadE/G-like.
       0.551
SEF13860.1
Flp pilus assembly protein TadG.
       0.527
SEF13762.1
Hypothetical protein.
 
      0.435
Your Current Organism:
Jiangella alba
NCBI taxonomy Id: 561176
Other names: CCTCC AA 208023, DSM 45237, J. alba, JCM 16901, Jiangella alba Qin et al. 2009, Jiangella sp. YIM 61503, YIM 61503
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.