STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF16674.1Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. (352 aa)    
Predicted Functional Partners:
SEF13242.1
Membrane carboxypeptidase (penicillin-binding protein).
 
   
 0.754
SEF12511.1
Membrane carboxypeptidase (penicillin-binding protein).
  
   
 0.640
SEE26464.1
Cell division transport system permease protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
  
 0.628
SEF14997.1
Membrane carboxypeptidase (penicillin-binding protein).
  
   
 0.627
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
  
 0.617
SEF09800.1
LD-carboxypeptidase LdcB, LAS superfamily.
  
  
 0.604
SEF14838.1
N-acetylmuramoyl-L-alanine amidase.
  
  
 0.567
SEE63830.1
Hypothetical protein.
  
  
 0.531
SEE85864.1
GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
  
   
 0.512
SEF16676.1
Hypothetical protein.
       0.492
Your Current Organism:
Jiangella alba
NCBI taxonomy Id: 561176
Other names: CCTCC AA 208023, DSM 45237, J. alba, JCM 16901, Jiangella alba Qin et al. 2009, Jiangella sp. YIM 61503, YIM 61503
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.