SEF17088.1 protein (Jiangella alba) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEF17088.1

stearoyl-CoA desaturase (delta-9 desaturase). (332 aa)

Predicted Functional Partners:

SED75310.1

0.833

SEF17086.1

0.733

SEE21011.1

0.695

SEF12604.1

0.695

SEF17082.1

0.695

SEF18390.1

0.695

SED62045.1

0.639

SEF09714.1

0.613

SEF17090.1

0.563

SEF10679.1

0.555

Your Current Organism:

Jiangella alba

NCBI taxonomy Id: 561176
Other names: CCTCC AA 208023, DSM 45237, J. alba, JCM 16901, Jiangella alba Qin et al. 2009, Jiangella sp. YIM 61503, YIM 61503

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SED62045.1	SEF17088.1	SAMN04488561_0114	SAMN04488561_5693	1-acyl-sn-glycerol-3-phosphate acyltransferases.	stearoyl-CoA desaturase (delta-9 desaturase).	0.639
SED75310.1	SEE21011.1	SAMN04488561_0334	SAMN04488561_0705	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	Fatty acid desaturase.	0.814
SED75310.1	SEF12604.1	SAMN04488561_0334	SAMN04488561_4264	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	Fatty acid desaturase.	0.814
SED75310.1	SEF17082.1	SAMN04488561_0334	SAMN04488561_5690	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	Fatty acid desaturase.	0.814
SED75310.1	SEF17088.1	SAMN04488561_0334	SAMN04488561_5693	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	stearoyl-CoA desaturase (delta-9 desaturase).	0.833
SED75310.1	SEF18390.1	SAMN04488561_0334	SAMN04488561_6450	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	Fatty acid desaturase.	0.814
SEE21011.1	SED75310.1	SAMN04488561_0705	SAMN04488561_0334	Fatty acid desaturase.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	0.814
SEE21011.1	SEF17088.1	SAMN04488561_0705	SAMN04488561_5693	Fatty acid desaturase.	stearoyl-CoA desaturase (delta-9 desaturase).	0.695
SEF09714.1	SEF17088.1	SAMN04488561_3839	SAMN04488561_5693	1-acyl-sn-glycerol-3-phosphate acyltransferase.	stearoyl-CoA desaturase (delta-9 desaturase).	0.613
SEF10679.1	SEF17088.1	SAMN04488561_3970	SAMN04488561_5693	Argininosuccinate lyase.	stearoyl-CoA desaturase (delta-9 desaturase).	0.555
SEF12604.1	SED75310.1	SAMN04488561_4264	SAMN04488561_0334	Fatty acid desaturase.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	0.814
SEF12604.1	SEF17088.1	SAMN04488561_4264	SAMN04488561_5693	Fatty acid desaturase.	stearoyl-CoA desaturase (delta-9 desaturase).	0.695
SEF17082.1	SED75310.1	SAMN04488561_5690	SAMN04488561_0334	Fatty acid desaturase.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	0.814
SEF17082.1	SEF17088.1	SAMN04488561_5690	SAMN04488561_5693	Fatty acid desaturase.	stearoyl-CoA desaturase (delta-9 desaturase).	0.695
SEF17086.1	SEF17088.1	SAMN04488561_5692	SAMN04488561_5693	DNA-binding transcriptional regulator, AcrR family.	stearoyl-CoA desaturase (delta-9 desaturase).	0.733
SEF17086.1	SEF17090.1	SAMN04488561_5692	SAMN04488561_5694	DNA-binding transcriptional regulator, AcrR family.	Hypothetical protein.	0.463
SEF17088.1	SED62045.1	SAMN04488561_5693	SAMN04488561_0114	stearoyl-CoA desaturase (delta-9 desaturase).	1-acyl-sn-glycerol-3-phosphate acyltransferases.	0.639
SEF17088.1	SED75310.1	SAMN04488561_5693	SAMN04488561_0334	stearoyl-CoA desaturase (delta-9 desaturase).	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	0.833
SEF17088.1	SEE21011.1	SAMN04488561_5693	SAMN04488561_0705	stearoyl-CoA desaturase (delta-9 desaturase).	Fatty acid desaturase.	0.695
SEF17088.1	SEF09714.1	SAMN04488561_5693	SAMN04488561_3839	stearoyl-CoA desaturase (delta-9 desaturase).	1-acyl-sn-glycerol-3-phosphate acyltransferase.	0.613