STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF17168.1Capsular polysaccharide biosynthesis protein. (341 aa)    
Predicted Functional Partners:
SEF17166.1
O-antigen ligase.
       0.812
SEF12845.1
Helicase/secretion neighborhood CpaE-like protein.
  
 
 0.807
SEF17814.1
ATP-binding protein involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 
 0.807
SEF17174.1
Glycosyl transferase family 2.
  
  
 0.568
SEF17100.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
  
 0.561
SEF17170.1
Polysaccharide pyruvyl transferase family protein WcaK.
  
    0.561
SEF17172.1
Coenzyme F420 hydrogenase subunit beta.
       0.558
SEF17176.1
Glycosyltransferase, GT2 family.
       0.546
SEE23193.1
Glycosyl transferase family 2.
  
  
 0.418
Your Current Organism:
Jiangella alba
NCBI taxonomy Id: 561176
Other names: CCTCC AA 208023, DSM 45237, J. alba, JCM 16901, Jiangella alba Qin et al. 2009, Jiangella sp. YIM 61503, YIM 61503
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.