STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnjHypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (558 aa)    
Predicted Functional Partners:
EEB36317.1
Polyprenyl synthetase; KEGG: pcu:pc1696 2.0e-39 crtE; probable farnesyltranstransferase K00804; Psort location: Cytoplasmic, score: 9.98; Belongs to the FPP/GGPP synthase family.
  
    0.820
EEB36422.1
Peptidase, U32 family; KEGG: tte:TTE1257 1.2e-117 Collagenase and related proteases K08303; Psort location: Cytoplasmic, score: 8.87.
       0.813
EEB36426.1
Transcriptional regulator, Fur family; Psort location: Cytoplasmic, score: 9.98; Belongs to the Fur family.
       0.813
EEB36428.1
KEGG: ctc:CTC01056 9.8e-15 putative Holliday junction resolvase K07447; Psort location: Cytoplasmic, score: 8.87.
       0.813
EEB36423.1
O-methyltransferase; KEGG: ctc:CTC01062 1.3e-26 caffeoyl-coA O-methyltransferase K00588.
       0.798
EEB36424.1
Hypothetical protein; KEGG: ctc:CTC01062 1.6e-14 caffeoyl-coA O-methyltransferase K00588.
       0.798
EEB36427.1
Hypothetical protein; KEGG: par:Psyc_0799 0.0012 gcvT; aminomethyltransferase K00605; Psort location: Cytoplasmic, score: 8.87.
       0.798
rny
YmdA/YtgF family protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
 
 
 0.762
EEB36421.1
Methyltransferase domain protein; KEGG: ava:Ava_0005 5.2e-06 probable methyltransferase K00598.
       0.590
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
 
  
 0.562
Your Current Organism:
Anaerococcus hydrogenalis
NCBI taxonomy Id: 561177
Other names: A. hydrogenalis DSM 7454, Anaerococcus hydrogenalis DSM 7454, Anaerococcus hydrogenalis GIFU 7662, Anaerococcus hydrogenalis str. DSM 7454, Anaerococcus hydrogenalis strain DSM 7454
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