STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufBFeS assembly protein SufB; Psort location: Cytoplasmic, score: 8.87. (509 aa)    
Predicted Functional Partners:
sufC
KEGG: ava:Ava_0425 7.3e-65 sufC; FeS assembly ATPase SufC K09013; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.999
sufS
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.983
EFA23578.1
SUF system FeS assembly protein, NifU family; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.962
sufD
FeS assembly protein SufD; Psort location: Cytoplasmic, score: 8.87.
 
   
0.928
EFA23573.1
Hypothetical protein.
       0.773
EFA23580.1
Hypothetical protein; KEGG: mac:MA2721 4.2e-05 serine O-acetyltransferase.
 
   
 0.769
EFA23572.1
Hypothetical protein.
  
    0.659
EFA23570.1
Putative CTP synthase; KEGG: blo:BL0874 2.2e-182 pyrG; CTP synthase K01937; Psort location: Cytoplasmic, score: 8.87.
       0.596
EFA23579.1
Hypothetical protein.
       0.464
Your Current Organism:
Bifidobacterium gallicum
NCBI taxonomy Id: 561180
Other names: B. gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum DSM 20093, Bifidobacterium gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum JCM 8224, Bifidobacterium gallicum LMG 11596, Bifidobacterium gallicum LMG 11596 = DSM 20093
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.