STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFA23630.1Oxidoreductase NAD-binding domain protein; KEGG: sat:SYN_02848 2.2e-26 dihydroorotate dehydrogenase electron transfer subunit K00226; Psort location: Cytoplasmic, score: 8.87. (271 aa)    
Predicted Functional Partners:
pyrD
Dihydroorotate oxidase; Catalyzes the conversion of dihydroorotate to orotate.
 0.999
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
  
 
 0.999
EFA23628.1
Amidohydrolase family protein; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
 
 
 0.997
pyrB
KEGG: blo:BL0794 4.3e-140 pyrB; aspartate carbamoyltransferase K00609; Psort location: Cytoplasmic, score: 9.98; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
 
 
 0.995
EFA23888.1
Dihydroorotate dehydrogenase 2; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
 0.991
EFA22120.1
Hypothetical protein; KEGG: sma:SAV4522 9.0e-12 pyrE; putative orotate phosphoribosyltransferase K00762; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.980
carB
KEGG: blo:BL0068 0. carB; carbamoyl-phosphate synthase large chain K01955; Psort location: Cytoplasmic, score: 8.87.
  
 0.968
carA
KEGG: blo:BL0067 4.0e-167 carA; carbamoyl-phosphate synthase small chain K01956; Psort location: Cytoplasmic, score: 8.87; Belongs to the CarA family.
  
 
 0.965
pyrF
KEGG: blo:BL0791 9.7e-118 pyrF; orotidine 5'-phosphate decarboxylase K01591; Belongs to the OMP decarboxylase family. Type 2 subfamily.
  
 
 0.940
EFA23607.1
Class II glutamine amidotransferase; KEGG: blo:BL0834 0. gltB; glutamate synthase [NADPH] large subunit; NADPH-gogat K00265; Psort location: Cytoplasmic, score: 8.87.
     
 0.887
Your Current Organism:
Bifidobacterium gallicum
NCBI taxonomy Id: 561180
Other names: B. gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum DSM 20093, Bifidobacterium gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum JCM 8224, Bifidobacterium gallicum LMG 11596, Bifidobacterium gallicum LMG 11596 = DSM 20093
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