STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nnrDPutative YjeF domain protein; Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. (603 aa)    
Predicted Functional Partners:
EFA23471.1
DEAD/DEAH box helicase; KEGG: eci:UTI89_C0798 1.4e-63 rhlE; putative ATP-dependent RNA helicase RhlE; Psort location: Cytoplasmic, score: 8.87.
  
 0.981
EFA23513.1
Hydrolase, NUDIX family; KEGG: lsa:LSA0774 1.8e-20 putative ADP-ribose pyrophosphatase, NUDIX family K01515; Psort location: Cytoplasmic, score: 10.00.
  
 0.939
EFA22391.1
Mutator mutT protein; KEGG: cgb:cg1303 3.6e-33 NTP pyrophosphohydrolase K03574; Psort location: Cytoplasmic, score: 8.87.
  
 0.939
EFA23145.1
Hydrolase, P-loop family; KEGG: cjk:jk1734 3.7e-19 alr; hypothetical protein K01775; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.813
groL
Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
  
   0.702
ruvA
Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.
 
 
   0.693
EFA23581.1
RNA methyltransferase, TrmH family; KEGG: blo:BL0865 1.4e-116 tnsR; possible tRNA/rRNA methyltransferase K00599; Psort location: Cytoplasmic, score: 8.87.
 
 
 
 0.683
EFA23616.1
Phosphoglycerate mutase family protein; KEGG: gbe:GbCGDNIH1_0899 1.9e-11 phosphohistidine phosphatase SixA K01112.
 
 
   0.658
EFA23192.1
KEGG: lwe:lwe1174 1.2e-27 rRNA methyltransferase, TrmH family K00599; Psort location: Cytoplasmic, score: 8.87.
   
 
 0.628
EFA22453.1
RNA methyltransferase, TrmH family, group 3; KEGG: lxx:Lxx18230 1.1e-75 tRNA/rRNA methyltransferase protein K03218; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
   
 
 0.628
Your Current Organism:
Bifidobacterium gallicum
NCBI taxonomy Id: 561180
Other names: B. gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum DSM 20093, Bifidobacterium gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum JCM 8224, Bifidobacterium gallicum LMG 11596, Bifidobacterium gallicum LMG 11596 = DSM 20093
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