STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFA23661.1DEAD/DEAH box helicase; KEGG: blo:BL0742 0. helY; probable helicase K03727; Psort location: Cytoplasmic, score: 8.87. (826 aa)    
Predicted Functional Partners:
rbpA
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
 
    0.787
EFA23660.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.773
EFA23662.1
Hypothetical protein.
       0.688
EFA23663.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.654
EFA23658.1
KEGG: efa:EF2916 3.7e-31 hydrolase, haloacid dehalogenase-like family K01091; Psort location: Cytoplasmic, score: 8.87.
       0.641
typA
GTP-binding protein TypA; KEGG: rha:RHA1_ro05933 4.5e-207 probable GTP binding elongation factor K06207; Psort location: Cytoplasmic, score: 9.98.
      
 0.591
EFA23664.1
KEGG: blo:BL0739 3.3e-204 ugpA; probable UTP-glucose-1-phosphate uridylyltransferase K00963; Psort location: Cytoplasmic, score: 8.87.
       0.564
whiB
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.518
secG
Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
  
     0.499
EFA23090.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.490
Your Current Organism:
Bifidobacterium gallicum
NCBI taxonomy Id: 561180
Other names: B. gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum DSM 20093, Bifidobacterium gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum JCM 8224, Bifidobacterium gallicum LMG 11596, Bifidobacterium gallicum LMG 11596 = DSM 20093
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.