STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFA23815.1ABC transporter, substrate-binding protein, family 5; KEGG: shn:Shewana3_2650 2.0e-12 acetate kinase K00925; Psort location: Cellwall, score: 9.17. (548 aa)    
Predicted Functional Partners:
EFA23817.1
KEGG: hpa:HPAG1_1109 3.6e-05 glutamine ABC transporter, permease protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.992
EFA23816.1
KEGG: rha:RHA1_ro09047 1.3e-37 ABC peptide transporter, permease component K02033; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.955
EFA23818.1
Putative phosphonate C-P lyase system protein PhnK; KEGG: fal:FRAAL4449 2.9e-111 putative dipeptide/oligopeptide transport protein (ABC superfamily, atp_bind); Psort location: CytoplasmicMembrane, score: 9.49; Belongs to the ABC transporter superfamily.
 
 
 0.932
EFA22996.1
ABC transporter, substrate-binding protein, family 5; KEGG: shn:Shewana3_2650 3.4e-15 acetate kinase K00925; Psort location: Cellwall, score: 9.17.
  
  
 
0.927
EFA22040.1
KEGG: fal:FRAAL2819 2.2e-63 oppD; oligopeptide transport protein (ABC superfamily, atp_bind); Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the binding-protein-dependent transport system permease family.
  
 
 0.880
EFA22041.1
KEGG: rha:RHA1_ro09047 6.0e-47 ABC peptide transporter, permease component K02033; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.805
EFA22572.1
ABC transporter, permease protein; KEGG: baa:BA_0884 0.00073 binding-protein-dependent transport systems inner membrane component K00294; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.764
EFA22573.1
KEGG: rha:RHA1_ro09047 1.5e-41 ABC peptide transporter, permease component K02033; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.760
EFA22025.1
KEGG: rha:RHA1_ro09047 2.0e-12 ABC peptide transporter, permease component K02033; Psort location: CytoplasmicMembrane, score: 9.82.
 
 
 0.752
EFA22229.1
ABC transporter, substrate-binding protein, family 5; KEGG: shn:Shewana3_2650 5.7e-20 acetate kinase K00925.
 
 
 0.707
Your Current Organism:
Bifidobacterium gallicum
NCBI taxonomy Id: 561180
Other names: B. gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum DSM 20093, Bifidobacterium gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum JCM 8224, Bifidobacterium gallicum LMG 11596, Bifidobacterium gallicum LMG 11596 = DSM 20093
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