STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFA22993.1Oxidoreductase, NAD-binding domain protein; KEGG: lpl:lp_1136 1.6e-37 oxidoreductase (putative). (390 aa)    
Predicted Functional Partners:
galK
Galactokinase; KEGG: blo:BL1210 4.9e-139 galK; galactokinase K00849; Psort location: Cytoplasmic, score: 8.87; Belongs to the GHMP kinase family. GalK subfamily.
 
 0.837
EFA22467.1
KEGG: tfu:Tfu_1336 3.2e-48 putative Sir2 family regulator K01463; Psort location: Cytoplasmic, score: 8.87.
   
  0.758
EFA23298.1
KEGG: fal:FRAAL2074 5.5e-21 suhB; inositol-1-monophosphatase (IMPase) (inositol-1-phosphatase) (I-1-Pase) K01092; Psort location: Cytoplasmic, score: 8.87.
    
 0.749
xylA
Xylose isomerase; KEGG: blo:BL1704 2.4e-201 xylA; xylose isomerase K01805; Psort location: Cytoplasmic, score: 9.98; Belongs to the xylose isomerase family.
  
 
 0.729
EFA23047.1
Aldehyde dehydrogenase (NAD) family protein; KEGG: cpr:CPR_2296 1.3e-106 aldehyde dehydrogenase K00129; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.712
EFA22791.1
Aldehyde dehydrogenase (NAD) family protein; KEGG: blo:BL1575 0. adh2; aldehyde-alcohol dehydrogenase 2 [includes: alcohol dehydrogenase (Adh); acetaldehyde dehydrogenase (AcdH)] K00001:K04072; Psort location: Cytoplasmic, score: 9.98; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.692
lysS
lysine--tRNA ligase; KEGG: blo:BL1654 1.6e-257 lysS; lysyl-tRNA synthetase 1 K04567; Psort location: Cytoplasmic, score: 9.98; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.675
EFA22995.1
Aminotransferase, class I/II; KEGG: blo:BL1741 4.2e-133 probable aspartate aminotransferase K00812.
       0.652
EFA22994.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.620
EFA23790.1
Aldose 1-epimerase; KEGG: fal:FRAAL2426 3.0e-36 putative aldose-1-epimerase K01785; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.607
Your Current Organism:
Bifidobacterium gallicum
NCBI taxonomy Id: 561180
Other names: B. gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum DSM 20093, Bifidobacterium gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum JCM 8224, Bifidobacterium gallicum LMG 11596, Bifidobacterium gallicum LMG 11596 = DSM 20093
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.