STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFA23011.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (132 aa)    
Predicted Functional Partners:
EFA23007.1
Hypothetical protein; KEGG: cal:orf19.4072 0.0027 HYR10; similar to cell surface flocculin K01186; Psort location: Cytoplasmic, score: 8.87.
       0.550
EFA23008.1
Hypothetical protein.
       0.550
EFA23009.1
Transposase, IS605 OrfB family; Psort location: Cytoplasmic, score: 8.87.
       0.550
EFA23010.1
Resolvase, N-terminal domain protein.
       0.550
EFA23012.1
Hypothetical protein.
       0.523
Your Current Organism:
Bifidobacterium gallicum
NCBI taxonomy Id: 561180
Other names: B. gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum DSM 20093, Bifidobacterium gallicum DSM 20093 = LMG 11596, Bifidobacterium gallicum JCM 8224, Bifidobacterium gallicum LMG 11596, Bifidobacterium gallicum LMG 11596 = DSM 20093
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.